STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CT1508Conserved hypothetical protein; Identified by similarity to GP:6460171; match to protein family HMM PF04371; Belongs to the agmatine deiminase family. (347 aa)    
Predicted Functional Partners:
CT1510
Identified by match to protein family HMM PF00795.
 
 0.999
pdaD
Conserved hypothetical protein; Identified by similarity to EGAD:104988; match to protein family HMM PF01862; match to protein family HMM TIGR00286; Belongs to the PdaD family.
    
  0.902
CT0415
Identified by match to protein family HMM PF00795.
 
  
 0.703
CT1509
CAAX prenyl protease 1, putative; Identified by similarity to EGAD:53859; match to protein family HMM PF01435.
       0.680
CT1512
Thioredoxin reductase, putative; Identified by similarity to EGAD:107359; match to protein family HMM PF00070; match to protein family HMM PF07992.
       0.680
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
       0.671
CT0274
Identified by match to protein family HMM PF00795.
  
 0.664
CT1513
Hypothetical protein; Identified by Glimmer2; putative.
       0.582
hisF
hisF protein (cyclase); IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
       0.414
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.