STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbcLRibulose bisphosphate carboxylase, large subunit; May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity; Belongs to the RuBisCO large chain family. Type IV subfamily. (435 aa)    
Predicted Functional Partners:
gph
Phosphoglycolate phosphatase; Identified by similarity to EGAD:8531; match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.
     
 0.906
CT1236
Phosphatase, putative; Identified by similarity to GP:9757183.
     
 0.906
CT1475
Transporter, putative; Identified by match to protein family HMM PF07690.
  
     0.747
CT1215
Thioredoxin; Identified by similarity to SP:P08058; match to protein family HMM PF00085; match to protein family HMM TIGR01068.
  
 
 
 0.733
CT1773
Conserved hypothetical protein; Identified by similarity to EGAD:91314; match to protein family HMM PF01791.
     
 0.711
trx-1
Thioredoxin; Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions.
    
 
 0.692
trx-2
Thioredoxin; Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions.
    
 
 0.692
CT1678
Conserved hypothetical protein; Identified by similarity to EGAD:49548.
  
    0.682
CT1771
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.664
CT1899
Acetyltransferase, CysE/LacA/LpxA/NodL family; Identified by similarity to EGAD:91084; match to protein family HMM PF00132.
    
 
 0.661
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
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