STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
3mgDNA-3-methyladenine glycosylase; Identified by match to protein family HMM PF02245; match to protein family HMM TIGR00567; Belongs to the DNA glycosylase MPG family. (209 aa)    
Predicted Functional Partners:
xth
AP (apurinic or apyrimidinic) endonuclease, xth family; Identified by similarity to EGAD:16058; match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.
    
 0.765
tadA
Cytosine deaminase, putative; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
    
 0.717
mgtE
Mg2+ transporter MgtE; Acts as a magnesium transporter.
       0.589
CT1852
ATPase, ParA family; Identified by match to protein family HMM PF01656.
       0.541
CT1851
Partitioning protein, ParB family; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.
       0.492
CT1849
Hypothetical protein; Identified by Glimmer2; putative.
       0.416
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
       0.416
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
     
 0.403
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.