STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smoSSorbitol dehydrogenase; Region:COG1028IQR. (257 aa)    
Predicted Functional Partners:
APG92084.1
ABC transporter permease y4oR; Region:COG0395G.
 
     0.906
APG92085.1
ABC transporter permease y4oQ; Region:COG1175G.
 
     0.893
smoK-2
ATP-binding transport protein SmoK; Region:COG3842E; Belongs to the ABC transporter superfamily.
 
   
 0.833
mtlK
Mannitol 2-dehydrogenase MtlK; Region:COG0246G; Belongs to the mannitol dehydrogenase family.
  
 0.820
APG92086.1
Mannitol ABC transporter substrate-binding protein; Region:COG1653G.
 
    0.791
APG92080.1
Hydrolase family protein; Region:COG0637GR.
 
 
 
 0.719
APG89897.1
Erythronolide synthase, modules 3 and 4; Region:COG0236IQ.
  
 
 0.552
betC
Choline-sulfatase BetC; Region:COG3119P.
   
 
 0.502
araB
Ribulokinase 2; Region:COG1069G.
     
 0.477
lsrR
Transcriptional regulator LsrR; Region:COG2390K.
 
     0.460
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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