STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nanJSialidase; Identified by similarity to SP:P29767; similarity to PDB:2V73_B; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF02012; match to protein family HMM PF02973. (1173 aa)    
Predicted Functional Partners:
nanH
Sialidase; Identified by similarity to SP:P10481; similarity to GB:CAA50436.1; match to protein family HMM PF02012.
  
  
  0.974
CPF_0221
Sulfatase family protein; Has sulfatase activity toward para-nitrophenyl sulfate, which is increased in presence of calcium ion.
  
 
 0.948
nanI
Sialidase; Identified by similarity to SP:Q54727; similarity to PDB:2BF6_A; match to protein family HMM PF02012; match to protein family HMM PF02973.
  
  
 
0.903
CPF_0491
Alpha-galactosidase; Identified by similarity to GB:AAD23585.1; match to protein family HMM PF02065.
     
  0.900
CPF_1487
Putative hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555; match to protein family HMM TIGR01167.
 
 0.829
nagH
Hyaluronoglucosaminidase; Identified by similarity to SP:P26831; match to protein family HMM PF00404; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555.
 
 0.823
CPF_0875
Putative O-GlcNAcase nagJ; Identified by similarity to SP:Q0TR53; match to protein family HMM PF00754; match to protein family HMM PF02838; match to protein family HMM PF07555; match to protein family HMM TIGR01167.
 
 
 0.753
CPF_1473
Conserved hypothetical protein.
  
  
 0.709
lacZ-2
Beta-galactosidase; Identified by similarity to SP:P26257; match to protein family HMM PF00404; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF07532; Belongs to the glycosyl hydrolase 2 family.
   
 0.671
CPF_2130
Calx-beta domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF03160.
  
   
 0.598
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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