STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atpB-2V-type ATPase, B subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit. (460 aa)    
Predicted Functional Partners:
atpD-2
V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.999
atpA-2
V-type ATPase, A subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
 
0.999
atpF-2
V-type ATPase, G subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.999
CPF_1892
V-type ATPase, C subunit; Identified by match to protein family HMM PF01992.
 
 0.999
atpE-2
V-type ATPase, E subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.999
CPF_1894
V-type ATPase, K subunit; Identified by match to protein family HMM PF00137; Belongs to the V-ATPase proteolipid subunit family.
 
 0.999
CPF_1895
V-type ATPase, I subunit; Identified by match to protein family HMM PF01496; Belongs to the V-ATPase 116 kDa subunit family.
 
 0.999
CPF_1896
ATP synthase homolog; Identified by similarity to SP:P00859; match to protein family HMM TIGR02926.
 
 0.985
atpE
ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.962
CPF_2312
Putative manganese-dependent inorganic pyrophosphatase; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833; match to protein family HMM PF07085.
   
 
  0.660
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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