STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN97_12495Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)    
Predicted Functional Partners:
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.805
CN97_12505
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.784
CN97_06020
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
CN97_02450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
CN97_09885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
CN97_12005
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
CN97_10530
Component of SufBCD complex; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
CN97_20260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
CN97_06070
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.764
CN97_06525
Elongation factor P; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.761
Your Current Organism:
Haematobacter massiliensis
NCBI taxonomy Id: 195105
Other names: CCUG 47968, CIP 107725, H. massiliensis, Haematobacter massiliensis Heisel et al. 2007, Rhodobacter massiliensis, Rhodobacter massiliensis Greub and Raoult 2006, cf. Rhodobacter sp. Framboise, strain Framboise
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