STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN97_12650Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (201 aa)    
Predicted Functional Partners:
CN97_12645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.808
CN97_12655
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.803
CN97_12640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.790
CN97_12625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.787
CN97_12630
Prophage tail fimber assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.786
CN97_12635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
CN97_12660
Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
CN97_12665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
CN97_12670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.680
CN97_12675
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.680
Your Current Organism:
Haematobacter massiliensis
NCBI taxonomy Id: 195105
Other names: CCUG 47968, CIP 107725, H. massiliensis, Haematobacter massiliensis Heisel et al. 2007, Rhodobacter massiliensis, Rhodobacter massiliensis Greub and Raoult 2006, cf. Rhodobacter sp. Framboise, strain Framboise
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