STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_0271tRNA and rRNA cytosine-C5-methylase; COG0144; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (309 aa)    
Predicted Functional Partners:
BD01_1387
Protein involved in ribosomal biogenesis, contains PUA domain; COG1374.
  
 
 0.720
BD01_0355
Ribosomal protein L27.
   
 
 0.693
BD01_1732
Protein implicated in ribosomal biogenesis, Nop56p-like protein; COG1498.
   
 
 0.693
BD01_1789
Putative GTPase; COG1161.
  
 
 0.689
BD01_0270
Ornithine carbamoyltransferase; COG0078; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
     
 0.637
rps8e
Ribosomal protein S8.e.
   
 
 0.634
rpl10
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.631
rpl7ae
Ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
 
 
 0.624
BD01_0247
Probable Brix domain-containing ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.
  
 
 0.611
rpl35ae
Ribosomal protein L35AE; Belongs to the eukaryotic ribosomal protein eL33 family.
  
 
   0.610
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.