STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_0874ABC-type Fe3+-siderophore transport system, permease component; COG0609. (315 aa)    
Predicted Functional Partners:
BD01_0873
Ribosomal protein L34.
 
 
 0.989
BD01_0875
ABC-type Fe3+-hydroxamate transport system, periplasmic component; COG0614.
 
 
 0.987
BD01_1236
Ribosomal protein S16.
 
 
 0.944
BD01_0443
ABC-type Fe3+-hydroxamate transport system, periplasmic component; COG0614.
 
 
 0.941
BD01_0145
Ribosomal protein L34.
 
 
 0.924
BD01_0143
ABC-type Fe3+-hydroxamate transport system, periplasmic component; COG0614.
 
 
 0.856
BD01_0872
Hypothetical protein; COG2014.
  
    0.824
BD01_0871
Thiol protease.
       0.533
BD01_0877
NAD-dependent aldehyde dehydrogenase; COG1012; Belongs to the aldehyde dehydrogenase family.
       0.492
BD01_0879
Hypothetical protein; COG1433.
     
 0.428
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.