STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_0909SAM-dependent methyltransferase; COG0500. (96 aa)    
Predicted Functional Partners:
BD01_0908
Mg-dependent DNase; COG0084.
       0.929
BD01_0905
Zn-dependent hydrolase, including glyoxylase; COG0491.
  
 
 0.734
BD01_0906
Uncharacterized protein conserved in archaea; COG1531; Belongs to the UPF0248 family.
       0.702
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
    
 0.633
BD01_0907
Hypothetical protein; COG1633.
       0.585
rps24e
Ribosomal protein S24E (rps24E); Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.546
rps3ae
Ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
   
  0.524
rps6e
Ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
   
  0.523
rps4e
Ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family.
   
  0.516
rps12
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
  
  0.508
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.