STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_2007Putative amidohydrolase; COG0388. (264 aa)    
Predicted Functional Partners:
BD01_0386
4-aminobutyrate aminotransferase-related aminotransferase; COG0160; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.951
BD01_1869
4-aminobutyrate aminotransferase-related aminotransferase; COG0160; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.949
mfnA
Glutamate decarboxylase-related PLP-dependent protein; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily.
  
 
 0.919
BD01_1978
Uncharacterized protein conserved in archaea; COG1701.
     
  0.900
BD01_0877
NAD-dependent aldehyde dehydrogenase; COG1012; Belongs to the aldehyde dehydrogenase family.
 
 
 0.492
BD01_0310
Threonine dehydrogenase-related Zn-dependent dehydrogenase; COG1063.
 
 
 0.483
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate.
 
 
 0.468
BD01_2005
Putative ICC-like phosphoesterase; COG1407.
       0.466
BD01_2263
Glutamate dehydrogenase/leucine dehydrogenase; COG0334; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.453
BD01_1311
Aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
 
   
 0.408
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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