STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD01_2178Hypothetical protein. (73 aa)    
Predicted Functional Partners:
BD01_2179
Hypothetical protein.
 
     0.914
truB
Pseudouridine synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
 
     0.811
BD01_2031
Hypothetical protein.
 
     0.500
cmk
Cytidylate kinase; COG1102.
       0.493
rpl14e
Ribosomal protein L14E (rpl14E); Belongs to the eukaryotic ribosomal protein eL14 family.
       0.493
rpl34e
Ribosomal protein L34E (rpl34E); Belongs to the eukaryotic ribosomal protein eL34 family.
       0.487
BD01_0760
Nucleotidyltransferase.
 
     0.426
adkA
Archaeal adenylate kinase; COG2019; Belongs to the archaeal adenylate kinase family.
       0.417
BD01_2174
Putative membrane protein; COG1422.
       0.417
rpl30
Ribosomal protein L30P (rpl30P).
 
     0.403
Your Current Organism:
Thermococcus nautili
NCBI taxonomy Id: 195522
Other names: CNCM 4275, JCM 19601, T. nautili, Thermococcus nautili Gorlas et al. 2014, Thermococcus nautilus, Thermococcus sp. 30-1, strain 30-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.