STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0019KEGG: fra:Francci3_0932 hypothetical protein. (313 aa)    
Predicted Functional Partners:
Noca_2675
PFAM: pentapeptide repeat protein.
 
     0.704
Noca_4255
KEGG: rha:RHA1_ro04851 hypothetical protein.
  
     0.570
Noca_3022
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sco:SCO2026 putative glutamate synthase large subunit.
  
    0.550
Noca_1022
Hypothetical protein; KEGG: mmc:Mmcs_0550 putative ABC transporter membrane protein.
  
     0.481
Noca_0018
PFAM: Rhomboid family protein; KEGG: mmc:Mmcs_5148 rhomboid-like protein.
       0.443
Noca_4498
KEGG: fal:FRAAL6618 hypothetical protein.
  
     0.442
Noca_0451
PFAM: GCN5-related N-acetyltransferase.
  
     0.438
Noca_3196
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fra:Francci3_1747 HAD-superfamily hydrolase, subfamily IA, variant 1.
  
     0.429
Noca_1322
Hypothetical protein; KEGG: sco:SCO6361 integral membrane protein.
  
     0.427
Noca_0017
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.423
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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