STRINGSTRING
Noca_0059 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0059" - Extracellular solute-binding protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0059Extracellular solute-binding protein (439 aa)    
Predicted Functional Partners:
Noca_0057
Hypothetical protein (482 aa)
 
          0.862
Noca_0060
Binding-protein-dependent transport systems inner membrane component (289 aa)
 
          0.852
Noca_0061
Binding-protein-dependent transport system inner membrane protein (297 aa)
 
          0.841
Noca_0056
Glycosyl hydrolase family 32 protein (415 aa)
 
          0.728
Noca_4682
Hypothetical protein (735 aa)
   
          0.664
Noca_0058
LacI family transcriptional regulator (338 aa)
 
          0.632
Noca_3168
Hypothetical protein (171 aa)
   
          0.607
Noca_1303
Extracellular solute-binding protein (432 aa)
   
          0.591
Noca_4290
ATPase domain-containing protein (315 aa)
   
          0.560
Noca_0109
Hypothetical protein (797 aa)
   
          0.498
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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