STRINGSTRING
Noca_0078 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0078" - Short-chain dehydrogenase/reductase SDR in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0078Short-chain dehydrogenase/reductase SDR (271 aa)    
Predicted Functional Partners:
Noca_0077
Inner-membrane translocator (331 aa)
              0.859
Noca_0076
ABC transporter-like protein (507 aa)
              0.859
Noca_4089
Short-chain dehydrogenase/reductase SDR (234 aa)
 
          0.777
Noca_0075
Sugar ABC transporter periplasmic component-like protein (336 aa)
              0.775
Noca_1729
Short chain dehydrogenase (227 aa)
   
          0.684
Noca_3816
Short-chain dehydrogenase/reductase SDR (228 aa)
   
          0.624
Noca_0079
5-oxoprolinase (687 aa)
              0.574
Noca_0084
FAD-dependent pyridine nucleotide-disulfide oxidoreductase (488 aa)
              0.574
Noca_0083
Hypothetical protein (112 aa)
              0.574
Noca_0082
FAD dependent oxidoreductase (393 aa)
              0.574
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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