STRINGSTRING
Noca_0087 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0087" - CdaR family transcriptional regulator in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0087CdaR family transcriptional regulator (383 aa)    
Predicted Functional Partners:
Noca_0637
Purine catabolism PurC domain-containing protein (486 aa)
   
          0.754
Noca_4149
Purine catabolism PurC domain-containing protein (509 aa)
   
          0.752
Noca_3378
Purine catabolism PurC domain-containing protein (445 aa)
   
          0.752
Noca_1487
Hypothetical protein (438 aa)
   
          0.744
Noca_4625
CdaR family transcriptional regulator (535 aa)
   
          0.686
Noca_0088
L-proline dehydrogenase (308 aa)
         
  0.677
Noca_0089
Delta-1-pyrroline-5-carboxylate dehydrogenase (542 aa)
              0.609
Noca_1111
Hypothetical protein (328 aa)
   
          0.559
Noca_0676
Hypothetical protein (170 aa)
   
          0.526
Noca_1836
CdaR family transcriptional regulator (384 aa)
   
          0.506
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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