STRINGSTRING
Noca_0115 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0115" - Regulatory protein MarR in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0115Regulatory protein MarR (169 aa)    
Predicted Functional Partners:
Noca_0114
MMPL domain-containing protein (673 aa)
 
          0.745
Noca_1343
Peptidase S8/S53 subtilisin kexin sedolisin (1000 aa)
   
          0.551
Noca_3805
Hypothetical protein (233 aa)
   
          0.464
Noca_0914
Hypothetical protein (150 aa)
   
          0.436
Noca_4378
Cupin 4 family protein (403 aa)
   
          0.422
Noca_2841
Hypothetical protein (313 aa)
   
          0.412
Noca_3036
FAD-dependent pyridine nucleotide-disulfide oxidoreductase (414 aa)
   
          0.407
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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