STRINGSTRING
Noca_0117 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0117" - PadR family transcriptional regulator in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0117PadR family transcriptional regulator (204 aa)    
Predicted Functional Partners:
Noca_0121
ABC transporter (252 aa)
 
          0.761
Noca_0116
Polyphosphate glucokinase (252 aa)
              0.655
Noca_0120
Daunorubicin resistance ABC transporter ATPase subunit (338 aa)
 
          0.643
Noca_0123
Regulatory protein TetR (187 aa)
   
          0.561
Noca_2791
Alpha/beta hydrolase fold protein (316 aa)
   
          0.530
Noca_0962
Hypothetical protein (248 aa)
   
          0.507
Noca_1103
Hypothetical protein (726 aa)
   
          0.484
Noca_0013
Hypothetical protein (115 aa)
   
          0.471
Noca_0213
Superfamily I DNA and RNA helicase (717 aa)
   
          0.467
Noca_4058
Pyridoxamine 5’-phosphate oxidase-like protein (184 aa)
   
          0.466
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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