STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0161PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sma:SAV4224 putative phosphodiesterase. (265 aa)    
Predicted Functional Partners:
Noca_2671
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sma:SAV6927 putative glycerophosphoryl diester phosphodiesterase.
  
  
 
0.924
Noca_2583
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cya:CYA_0909 glycerophosphoryl diester phosphodiesterase family protein.
     
  0.900
Noca_4033
PFAM: Ethanolamine ammonia-lyase light chain; KEGG: dsy:DSY4961 hypothetical protein.
     
  0.900
Noca_4034
Ethanolamine ammonia-lyase heavy chain; PFAM: Ethanolamine ammonia lyase large subunit; KEGG: ctc:CTC02176 ethanolamine ammonia-lyase heavy chain.
     
  0.900
Noca_4035
Reactivating factor of Adenosylcobalamin-dependent ethanolamine ammonia lyase; PFAM: Ethanolamine utilisation EutA; KEGG: stm:STM2459 CPPZ-55 prophage; chaperonin in ethanolamine utilization.
     
  0.900
Noca_0162
PFAM: SEC-C motif domain protein; KEGG: sma:SAV4226 hypothetical protein.
 
     0.847
Noca_0160
methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr1095 hypothetical protein.
       0.779
Noca_3101
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
 
  
 0.757
Noca_0159
KEGG: rha:RHA1_ro02400 hypothetical protein.
       0.530
Noca_3576
TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: bcn:Bcen_2859 MIP family channel proteins; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.513
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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