STRINGSTRING
Noca_0188 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0188" - Regulatory protein LuxR in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0188Regulatory protein LuxR (255 aa)    
Predicted Functional Partners:
Noca_0320
Hypothetical protein (197 aa)
   
          0.649
Noca_3958
Hypothetical protein (118 aa)
   
          0.637
Noca_1471
Integral membrane protein (100 aa)
   
          0.614
Noca_1391
Hypothetical protein (108 aa)
   
          0.614
Noca_0906
Hypothetical protein (189 aa)
   
          0.584
Noca_2197
Alkylmercury lyase (317 aa)
   
          0.573
Noca_0189
LuxR family transcriptional regulator (340 aa)
   
          0.553
Noca_3688
Extracellular solute-binding protein (466 aa)
   
          0.545
Noca_3950
Secreted protein (907 aa)
   
          0.532
Noca_1817
Hypothetical protein (497 aa)
   
          0.525
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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