STRINGSTRING
Noca_0333 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0333" - Sigma-70 region 4 domain-containing protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0333Sigma-70 region 4 domain-containing protein (268 aa)    
Predicted Functional Partners:
Noca_0334
FliA/WhiG family RNA polymerase sigma factor (300 aa)
 
       
0.559
Noca_0332
Sigma-70 region 4 domain-containing protein (278 aa)
 
       
0.501
Noca_0761
Flagellar basal-body rod protein (130 aa)
   
          0.474
Noca_0759
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction (531 aa)
   
          0.436
Noca_3950
Secreted protein (907 aa)
   
          0.434
Noca_3758
Secreted protein (911 aa)
   
          0.427
Noca_3601
Methyl-accepting chemotaxis sensory transducer (91 aa)
   
          0.418
Noca_0748
OmpA/MotB domain-containing protein (302 aa)
   
          0.417
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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