STRINGSTRING
Noca_0365 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0365" - Type II secretion system protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0365Type II secretion system protein (258 aa)    
Predicted Functional Partners:
Noca_0363
Septum site determining protein (348 aa)
 
          0.952
Noca_0366
Type II secretion system protein (240 aa)
 
          0.930
Noca_0364
Type II secretion system protein E (387 aa)
 
          0.896
Noca_1413
Hypothetical protein (475 aa)
   
          0.700
Noca_1427
Hypothetical protein (342 aa)
   
          0.693
Noca_3709
Peptidase S15 (519 aa)
   
          0.654
Noca_0362
HAD family hydrolase (289 aa)
              0.653
Noca_2458
Hypothetical protein (175 aa)
   
          0.624
Noca_3469
Hypothetical protein (126 aa)
   
          0.543
Noca_1787
Hypothetical protein (255 aa)
   
          0.540
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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