STRINGSTRING
Noca_0388 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0388" - TAP domain-containing protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0388TAP domain-containing protein (521 aa)    
Predicted Functional Partners:
Noca_0387
DNA polymerase III subunit delta’ (385 aa)
 
          0.898
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (222 aa)
              0.878
Noca_1984
Hypothetical protein (172 aa)
   
          0.768
Noca_1058
Secreted protein (222 aa)
   
          0.597
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (905 aa)
              0.552
Noca_3675
Hypothetical protein (209 aa)
   
          0.505
Noca_1511
Hypothetical protein (264 aa)
   
          0.477
Noca_1434
ATPase domain-containing protein (544 aa)
   
          0.473
Noca_4053
Hypothetical protein (266 aa)
   
          0.464
Noca_4250
Glycine cleavage T protein (aminomethyl transferase) (324 aa)
 
        0.463
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (8%) [HD]