STRINGSTRING
Noca_0414 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0414" - Peptidase S15 in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0414Peptidase S15 (763 aa)    
Predicted Functional Partners:
Noca_0281
Hypothetical protein (198 aa)
   
          0.777
Noca_0413
Hypothetical protein (122 aa)
              0.652
Noca_0790
UTP--glucose-1-phosphate uridylyltransferase (461 aa)
       
      0.645
Noca_2980
Sigma-70 region 3 domain-containing protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (319 aa)
       
      0.616
sigA
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (495 aa)
       
      0.616
Noca_0415
Hypothetical protein (203 aa)
              0.614
Noca_0838
Hypothetical protein (220 aa)
   
          0.589
Noca_0105
Putative lipoate-protein ligase A (233 aa)
       
      0.534
Noca_2487
Hypothetical protein (436 aa)
   
          0.505
Noca_3208
Hypothetical protein (79 aa)
   
          0.472
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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