STRINGSTRING
Noca_0427 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0427" - Short chain dehydrogenase in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0427Short chain dehydrogenase (270 aa)    
Predicted Functional Partners:
Noca_4562
Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase (736 aa)
   
  0.881
Noca_2854
3-hydroxyacyl-CoA dehydrogenase (696 aa)
   
  0.881
Noca_0428
Beta-lactamase domain-containing protein (366 aa)
   
   
  0.853
Noca_0426
Dihydrodipicolinate reductase (373 aa)
 
          0.836
Noca_3380
Short-chain dehydrogenase/reductase SDR (240 aa)
 
          0.773
Noca_3561
Short chain dehydrogenase (276 aa)
   
          0.770
Noca_4089
Short-chain dehydrogenase/reductase SDR (234 aa)
   
          0.762
Noca_2840
Short chain dehydrogenase (302 aa)
   
          0.754
Noca_4135
Dehydratase (155 aa)
   
  0.753
Noca_4109
Dehydratase (150 aa)
   
  0.753
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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