STRINGSTRING
Noca_0477 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0477" - TetR family transcriptional regulator in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0477TetR family transcriptional regulator (202 aa)    
Predicted Functional Partners:
Noca_0478
ABC transporter-like protein (249 aa)
 
          0.896
Noca_0476
Xylose isomerase domain-containing protein (262 aa)
   
        0.882
Noca_0475
Ppx/GppA phosphatase (311 aa)
              0.869
Noca_0479
ABC transporter (245 aa)
 
        0.850
Noca_0474
Hypothetical protein (256 aa)
              0.666
Noca_0029
N-acetyltransferase GCN5 (189 aa)
   
          0.458
Noca_0480
L-proline dehydrogenase (316 aa)
              0.446
Noca_0472
Type 11 methyltransferase (251 aa)
              0.432
Noca_0473
Hypothetical protein (212 aa)
              0.420
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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