STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0478PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa19890 putative ABC transporter ATP-binding protein. (249 aa)    
Predicted Functional Partners:
Noca_0479
PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro00945 ABC transporter, permease component.
  
 0.965
Noca_0477
PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro00946 transcriptional regulator, TetR family.
 
   
 0.801
Noca_0476
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sco:SCO3347 conserved hypothetical protein.
       0.700
Noca_0475
PFAM: Ppx/GppA phosphatase; KEGG: sco:SCO3348 putative DNA-binding protein.
       0.689
Noca_4448
KEGG: sco:SCO3959 possible integral membrane protein.
  
 
 0.581
Noca_0474
KEGG: sco:SCO3349 conserved hypothetical protein.
       0.505
Noca_2560
KEGG: nfa:nfa24760 putative ABC transporter.
 
  
 0.497
Noca_1666
KEGG: rha:RHA1_ro06064 possible ABC antibiotics transporter.
 
  
 0.479
Noca_0736
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL0788 putative ABC phosphate-transporting ATPase.
 
 0.476
Noca_0121
PFAM: ABC-2 type transporter; KEGG: sco:SCO5382 putative ABC transporter, integral membrane subunit.
 
  
 0.469
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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