STRINGSTRING
Noca_0479 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0479" - ABC transporter in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0479ABC transporter (245 aa)    
Predicted Functional Partners:
Noca_0478
ABC transporter-like protein (249 aa)
  0.984
Noca_0477
TetR family transcriptional regulator (202 aa)
 
        0.850
Noca_2559
ABC transporter-like protein (309 aa)
  0.845
Noca_1665
ABC transporter-like protein (316 aa)
  0.843
Noca_2211
ABC transporter-like protein (312 aa)
  0.838
Noca_1952
ABC transporter-like protein (215 aa)
 
  0.787
Noca_4497
ABC transporter-like protein (314 aa)
 
  0.786
Noca_4447
ABC transporter-like protein (303 aa)
 
  0.786
Noca_2545
ABC transporter-like protein (315 aa)
 
  0.786
Noca_1482
Daunorubicin resistance ABC transporter ATPase subunit (344 aa)
 
  0.786
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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