STRINGSTRING
Noca_0608 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0608" - CdaR family transcriptional regulator in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0608CdaR family transcriptional regulator (416 aa)    
Predicted Functional Partners:
Noca_0613
Hypothetical protein (383 aa)
 
          0.643
Noca_0611
ABC transporter-like protein (534 aa)
              0.642
Noca_0610
Inner-membrane translocator (358 aa)
              0.642
Noca_0609
Hypothetical protein (247 aa)
              0.642
Noca_4276
CdaR family transcriptional regulator (552 aa)
   
          0.591
Noca_2212
Putative ABC antibiotics transporter (528 aa)
   
          0.578
Noca_1487
Hypothetical protein (438 aa)
   
          0.559
Noca_2142
Hypothetical protein (352 aa)
   
          0.558
Noca_1666
Putative ABC antibiotics transporter (548 aa)
   
          0.552
Noca_1836
CdaR family transcriptional regulator (384 aa)
   
          0.536
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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