STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0689PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_3244 short-chain dehydrogenase/reductase SDR. (269 aa)    
Predicted Functional Partners:
Noca_0653
PFAM: monooxygenase, FAD-binding; KEGG: rha:RHA1_ro03540 pentachlorophenol monooxygenase.
   
 0.909
Noca_0832
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_0300 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.906
Noca_2134
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro01381 possible ferredoxin--NAD(+) reductase.
  
 
 0.906
Noca_3355
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: sco:SCO7117 ferredoxin reductase.
  
 
 0.906
Noca_4282
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro04374 reductase.
  
 
 0.906
Noca_2552
PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO1923 putative dioxygenase ferredoxin subunit.
  
 
  0.904
Noca_4280
PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04376 probable aromatic ring dioxygenase.
  
 
  0.904
Noca_0796
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro02334 possible 3-oxoacyl-[acyl-carrier-protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.796
Noca_3816
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_1357 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.786
Noca_0409
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rxy:Rxyl_0706 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.782
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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