STRINGSTRING
Noca_0728 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0728" - Hypothetical protein in Nocardioides sp. JS614
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0728Hypothetical protein (334 aa)    
Predicted Functional Partners:
Noca_0727
Hypothetical protein (324 aa)
              0.859
Noca_0726
Hypothetical protein (407 aa)
              0.859
Noca_2958
DNA topoisomerase IV subunit B (710 aa)
     
 
  0.854
Noca_2949
DNA topoisomerase IV subunit A (826 aa)
     
 
  0.854
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (922 aa)
     
 
  0.854
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (711 aa)
     
 
  0.854
Noca_0729
Appr-1-p processing domain-containing protein (196 aa)
   
      0.671
Noca_1235
ATP dependent DNA ligase (311 aa)
 
 
  0.663
Noca_0725
FAD linked oxidase domain-containing protein (906 aa)
              0.625
Noca_0724
Iron-containing alcohol dehydrogenase (418 aa)
              0.625
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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