STRINGSTRING
Noca_0788 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0788" - Penicillin amidase in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0788Penicillin amidase (872 aa)    
Predicted Functional Partners:
Noca_0787
FmdB family regulatory protein (93 aa)
              0.667
Noca_2453
Hypothetical protein (165 aa)
   
          0.540
Noca_3278
Major facilitator transporter (415 aa)
   
          0.497
Noca_0786
SAF domain-containing protein (211 aa)
              0.484
Noca_0785
Large-conductance mechanosensitive channel (129 aa)
              0.471
Noca_2458
Hypothetical protein (175 aa)
   
          0.467
Noca_3481
Stage II sporulation E family protein (367 aa)
   
          0.420
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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