STRINGSTRING
Noca_0914 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0914" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0914Hypothetical protein (150 aa)    
Predicted Functional Partners:
Noca_0913
Inositol monophosphatase (259 aa)
              0.859
Noca_2806
ABC transporter-like protein (1185 aa)
   
          0.759
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis (217 aa)
              0.748
ctc
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance (223 aa)
              0.748
Noca_2400
Extracellular solute-binding protein (599 aa)
   
          0.711
Noca_2841
Hypothetical protein (313 aa)
   
          0.678
Noca_4346
Helix-turn-helix, type 11 domain-containing protein (330 aa)
   
          0.663
Noca_1791
Hypothetical protein (180 aa)
   
          0.643
Noca_1196
Hypothetical protein (174 aa)
   
          0.634
Noca_1597
GtrA family protein (154 aa)
   
          0.631
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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