STRINGSTRING
Noca_0988 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0988" - UspA domain-containing protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0988UspA domain-containing protein (304 aa)    
Predicted Functional Partners:
Noca_1997
UspA domain-containing protein (386 aa)
   
          0.765
Noca_0948
UspA domain-containing protein (290 aa)
   
          0.613
Noca_0987
Pyruvate phosphate dikinase (897 aa)
              0.605
Noca_0994
GAF domain-containing protein (577 aa)
   
          0.601
Noca_0993
Putative DNA-binding protein (140 aa)
   
          0.589
Noca_4670
Peptidase S8/S53 subtilisin kexin sedolisin (531 aa)
   
          0.552
Noca_3102
Hypothetical protein (294 aa)
   
          0.549
Noca_0946
GAF domain-containing protein (536 aa)
   
          0.533
Noca_0999
Hypothetical protein (135 aa)
   
          0.506
Noca_4285
Hypothetical protein (289 aa)
   
          0.500
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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