STRINGSTRING
Noca_1028 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1028" - DegT/DnrJ/EryC1/StrS aminotransferase in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1028DegT/DnrJ/EryC1/StrS aminotransferase (269 aa)    
Predicted Functional Partners:
Noca_4184
Polysaccharide biosynthesis protein CapD (610 aa)
 
 
  0.899
Noca_4211
Oxidoreductase domain-containing protein (337 aa)
 
 
  0.886
Noca_1030
Hypothetical protein (238 aa)
              0.859
Noca_1029
ATPase central domain-containing protein (583 aa)
              0.859
Noca_4209
Putative acetyltransferase (198 aa)
 
 
  0.832
Noca_1031
Hypothetical protein (476 aa)
              0.763
Noca_4212
UDP-glucose/GDP-mannose dehydrogenase (433 aa)
 
   
  0.739
Noca_3992
Oxidoreductase domain-containing protein (336 aa)
   
 
  0.734
Noca_3713
NAD-dependent epimerase/dehydratase (306 aa)
   
 
  0.723
Noca_3523
NAD-dependent epimerase/dehydratase (277 aa)
   
 
  0.723
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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