STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1034PFAM: Radical SAM domain protein; KEGG: rpe:RPE_3191 radical SAM domain protein. (375 aa)    
Predicted Functional Partners:
Noca_1033
PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: tac:Ta0575 probable aspartate carbamoyltransferase, catalytic chain.
       0.773
Noca_1032
Hypothetical protein.
       0.686
Noca_1281
PFAM: peptidase C11, clostripain; KEGG: mac:MA4003 clostripain.
  
     0.620
Noca_2345
PFAM: protein of unknown function DUF344; KEGG: mmc:Mmcs_0639 protein of unknown function DUF344.
   
    0.569
Noca_2784
PFAM: protein of unknown function DUF344; KEGG: mbo:Mb3261c possible transcriptional regulatory protein PvdS (probable RNA polymerase sigma factor).
   
    0.569
Noca_1035
PFAM: nitroreductase; KEGG: sth:STH638 nitroreductase.
       0.550
Noca_1031
Hypothetical protein.
       0.535
Noca_1028
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mbu:Mbur_1610 DegT/DnrJ/EryC1/StrS aminotransferase.
  
    0.505
Noca_1029
PFAM: AAA ATPase, central domain protein; KEGG: tde:TDE1329 ATPase, AAA family.
       0.482
Noca_1030
Hypothetical protein.
       0.482
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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