STRINGSTRING
Noca_1060 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1060" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1060Hypothetical protein (227 aa)    
Predicted Functional Partners:
fumC
Fumarate hydratase (465 aa)
   
        0.867
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (466 aa)
   
  0.759
Noca_3382
Agmatinase (321 aa)
   
 
  0.709
Noca_3224
Agmatinase (333 aa)
   
 
  0.709
Noca_2044
NAD synthetase (681 aa)
   
 
  0.700
Noca_3362
Orn/Lys/Arg decarboxylase, major region (473 aa)
       
  0.697
Noca_3639
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (262 aa)
   
 
  0.679
Noca_0597
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (280 aa)
   
 
  0.679
Noca_0183
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (261 aa)
   
 
  0.679
rplD
50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel (259 aa)
     
        0.650
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (6%) [HD]