STRINGSTRING
Noca_1104 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1104" - Type I restriction-modification system, M subunit in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1104Type I restriction-modification system, M subunit (519 aa)    
Predicted Functional Partners:
Noca_1105
Restriction modification system DNA specificity subunit (225 aa)
 
 
  0.997
Noca_1106
Restriction modification system DNA specificity subunit (161 aa)
 
  0.994
Noca_1107
HsdR family type I site-specific deoxyribonuclease (1013 aa)
 
   
  0.985
Noca_1103
Hypothetical protein (726 aa)
              0.843
Noca_1108
Hypothetical protein (68 aa)
              0.492
Noca_1586
Restriction endonuclease (304 aa)
         
  0.487
Noca_3006
DNA polymerase I (889 aa)
         
  0.452
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (752 aa)
   
   
  0.422
Noca_4680
Hypothetical protein (529 aa)
              0.408
Noca_1523
Hypothetical protein (170 aa)
              0.408
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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