STRINGSTRING
Noca_1107 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1107" - HsdR family type I site-specific deoxyribonuclease in Nocardioides sp. JS614
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1107HsdR family type I site-specific deoxyribonuclease (1013 aa)    
Predicted Functional Partners:
Noca_1106
Restriction modification system DNA specificity subunit (161 aa)
 
   
  0.990
Noca_1104
Type I restriction-modification system, M subunit (519 aa)
 
   
  0.985
Noca_1105
Restriction modification system DNA specificity subunit (225 aa)
 
   
  0.983
Noca_1103
Hypothetical protein (726 aa)
   
        0.792
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5’-phosphoribosyl)-anthranilate (PRA) (341 aa)
       
      0.592
Noca_1108
Hypothetical protein (68 aa)
              0.559
Noca_2980
Sigma-70 region 3 domain-containing protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (319 aa)
       
 
  0.551
sigA
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (495 aa)
       
 
  0.551
Noca_4037
Ethanolamine transporter (486 aa)
     
      0.466
Noca_3379
Amino acid permease-associated protein (505 aa)
     
      0.466
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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