STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1194KEGG: sma:SAV3126 hypothetical protein. (320 aa)    
Predicted Functional Partners:
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
 
     0.784
Noca_2946
KEGG: sco:SCO5843 hypothetical protein.
  
     0.612
Noca_1196
PFAM: protein of unknown function DUF664; KEGG: sma:SAV7047 hypothetical protein.
  
    0.562
Noca_3076
KEGG: sco:SCO2097 hypothetical protein.
  
     0.530
Noca_0929
PFAM: Septum formation initiator; KEGG: pac:PPA0546 conserved protein, putative septum formation initiator.
 
   
 0.529
Noca_2458
KEGG: sco:SCO1602 hypothetical protein.
 
  
 0.524
Noca_1413
KEGG: tfu:Tfu_2513 hypothetical protein.
 
 
 
 0.514
Noca_4600
PFAM: penicillin-binding protein, transpeptidase; KEGG: mxa:MXAN_7139 putative penicillin-binding protein.
 
 
 0.508
Noca_1200
TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tfu:Tfu_0495 succinyl-diaminopimelate desuccinylase.
 
     0.505
Noca_3198
PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV2560 putative acetyltransferase.
 
    0.481
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.