STRINGSTRING
Noca_1223 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1223" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1223Hypothetical protein (163 aa)    
Predicted Functional Partners:
Noca_1222
Hypothetical protein (160 aa)
 
       
0.869
Noca_0153
Hypothetical protein (234 aa)
   
          0.748
Noca_1385
Hypothetical protein (229 aa)
   
          0.646
kynA
Tryptophan 2,3-dioxygenase; Catalyzes the oxidative cleavage of the L-tryptophan (L- Trp) pyrrole ring (267 aa)
              0.634
Noca_1805
NUDIX hydrolase (253 aa)
   
          0.624
Noca_0276
Hypothetical protein (161 aa)
   
          0.607
Noca_3857
Transglycosylase domain-containing protein (387 aa)
   
          0.606
Noca_3531
Uridine kinase (203 aa)
   
          0.596
Noca_2305
Hypothetical protein (149 aa)
   
          0.592
Noca_1225
Glutamate dehydrogenase (1639 aa)
              0.568
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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