STRINGSTRING
Noca_1226 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1226" - ABC transporter in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1226ABC transporter (595 aa)    
Predicted Functional Partners:
Noca_1227
ABC transporter-like protein (619 aa)
 
       
0.889
Noca_0944
ABC transporter transmembrane protein, type 1 (1081 aa)
 
0.860
Noca_1225
Glutamate dehydrogenase (1639 aa)
   
        0.688
dnaK
Chaperone protein DnaK; Acts as a chaperone (621 aa)
   
  0.684
Noca_0736
ABC transporter-like protein (578 aa)
 
 
 
0.645
Noca_4047
Hypothetical protein (312 aa)
   
      0.645
Noca_3091
Hypothetical protein (294 aa)
   
      0.645
ftsH
Mername-AA223 peptidase; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (681 aa)
 
 
  0.623
Noca_1228
Amidase (466 aa)
   
   
  0.603
arc
Vesicle-fusing ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a ’key in a lock’ to induce gate opening and therefore regulate proteolysis (584 aa)
   
  0.584
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (18%) [HD]