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Noca_1235 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1235" - ATP dependent DNA ligase in Nocardioides sp. JS614
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1235ATP dependent DNA ligase (311 aa)    
Predicted Functional Partners:
Noca_1237
ATP dependent DNA ligase (304 aa)
 
  0.999
Noca_2856
DNA primase-like protein (455 aa)
 
  0.993
Noca_2445
Putative DNA ligase (ATP), C-terminal (326 aa)
 
 
  0.989
Noca_3665
Hypothetical protein (360 aa)
 
 
  0.978
ku
DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5’- and 3’- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD (331 aa)
 
   
  0.953
Noca_0002
DNA polymerase III subunit beta; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (408 aa)
     
  0.944
Noca_3006
DNA polymerase I (889 aa)
   
  0.864
Noca_1236
Secreted protein (240 aa)
              0.859
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3’->5’ double strand exonuclease that can open hairpins. It also has a 5’ single-strand endonuclease activity (386 aa)
     
  0.827
Noca_2842
5’-3’ exonuclease (289 aa)
   
  0.788
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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