STRINGSTRING
Noca_1253 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1253" - Type II secretion system protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1253Type II secretion system protein (284 aa)    
Predicted Functional Partners:
Noca_1254
Type II secretion system protein (312 aa)
 
          0.971
Noca_1252
Type II secretion system protein E (435 aa)
 
          0.971
Noca_1255
Hypothetical protein (68 aa)
 
          0.953
Noca_1256
TadE family protein (127 aa)
 
          0.953
Noca_1215
Hypothetical protein (437 aa)
   
          0.778
Noca_1213
DNA binding domain-containing protein (81 aa)
   
          0.777
Noca_4053
Hypothetical protein (266 aa)
   
          0.774
Noca_1214
Putative signal peptide (224 aa)
   
          0.774
Noca_1511
Hypothetical protein (264 aa)
   
          0.767
Noca_1258
Hypothetical protein (149 aa)
              0.709
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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