STRINGSTRING
Noca_1298 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1298" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1298Hypothetical protein (178 aa)    
Predicted Functional Partners:
Noca_1299
5’-nucleotidase domain-containing protein (615 aa)
              0.681
Noca_1297
Regulatory protein MarR (157 aa)
              0.651
Noca_1296
Major facilitator transporter (406 aa)
              0.651
Noca_0431
Alkylhydroperoxidase (195 aa)
   
          0.486
Noca_2836
Hypothetical protein (145 aa)
   
          0.448
Noca_3171
Carboxymuconolactone decarboxylase (201 aa)
   
          0.443
Noca_3196
HAD family hydrolase (237 aa)
   
          0.421
Noca_1546
TadE family protein (137 aa)
   
          0.413
Noca_4239
Sulfur transfer protein ThiS (90 aa)
   
          0.406
Noca_4384
Putative gualylate cyclase protein (84 aa)
   
          0.402
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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