STRINGSTRING
Noca_1398 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1398" - Cell envelope-related transcriptional attenuator in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1398Cell envelope-related transcriptional attenuator (481 aa)    
Predicted Functional Partners:
Noca_1943
Hypothetical protein (289 aa)
   
          0.746
Noca_1739
Cell envelope-related transcriptional attenuator (302 aa)
   
          0.713
Noca_4185
Lipopolysaccharide biosynthesis protein (473 aa)
         
  0.699
Noca_0473
Hypothetical protein (212 aa)
   
          0.698
Noca_3055
DivIVA family protein (247 aa)
   
          0.679
Noca_1800
Hypothetical protein (170 aa)
   
          0.677
Noca_3335
Abortive infection protein (330 aa)
   
          0.659
Noca_1400
Glycosyl transferase family protein (306 aa)
              0.654
Noca_1399
Glycosyl transferase family protein (315 aa)
              0.654
Noca_1401
UDP-galactopyranose mutase (395 aa)
         
  0.634
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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