STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1408KEGG: fal:FRAAL1258 hypothetical protein; putative signal peptide. (251 aa)    
Predicted Functional Partners:
Noca_4682
KEGG: sco:SCO3895 hypothetical protein.
  
     0.753
Noca_3586
Hypothetical protein; KEGG: sma:SAV3318 putative RNA polymerase ECF-subfamily sigma factor.
  
     0.717
Noca_4019
PFAM: metallophosphoesterase; KEGG: swo:Swol_2226 hypothetical protein.
  
     0.716
Noca_1410
LPPG:FO 2-phospho-L-lactate transferase; TIGRFAM: LPPG; PFAM: protein of unknown function UPF0052 and CofD; KEGG: sco:SCO3036 LPPG:FO 2-phopspho-L-lactate transferase.
       0.708
Noca_1711
KEGG: bat:BAS2855 hypothetical protein.
  
     0.701
Noca_1217
KEGG: rha:RHA1_ro02410 hypothetical protein.
  
     0.687
Noca_0488
KEGG: sma:SAV4734 hypothetical protein.
  
     0.677
Noca_2818
KEGG: sma:SAV5893 hypothetical protein.
  
     0.657
Noca_1409
TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129; KEGG: tfu:Tfu_2518 hypothetical protein.
       0.650
Noca_1413
KEGG: tfu:Tfu_2513 hypothetical protein.
 
     0.646
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.