STRINGSTRING
Noca_1706 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1706" - Sigma-70 region 2 domain-containing protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1706Sigma-70 region 2 domain-containing protein (217 aa)    
Predicted Functional Partners:
Noca_1707
Anti-sigma factor (92 aa)
         
  0.946
Noca_1704
Hypothetical protein (253 aa)
              0.772
Noca_1677
Hypothetical protein (239 aa)
     
 
  0.747
Noca_1705
Hypothetical protein (220 aa)
              0.696
sigA
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (495 aa)
   
 
  0.639
Noca_3813
Sigma-70 region 2 domain-containing protein (257 aa)
           
  0.576
Noca_1715
Sigma-70 region 2 domain-containing protein (270 aa)
           
  0.576
Noca_1393
Sigma-70 region 4 domain-containing protein (260 aa)
           
  0.576
Noca_3654
Sigma-70 factor (172 aa)
   
          0.565
Noca_3587
Sigma-70 factor (170 aa)
   
          0.557
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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