STRINGSTRING
Noca_1716 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1716" - Anti-sigma factor in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1716Anti-sigma factor (143 aa)    
Predicted Functional Partners:
Noca_1715
Sigma-70 region 2 domain-containing protein (270 aa)
 
     
  0.974
Noca_2368
Sporulation and cell division protein SsgA (118 aa)
   
          0.749
Noca_1464
Hypothetical protein (215 aa)
   
          0.706
Noca_1393
Sigma-70 region 4 domain-containing protein (260 aa)
 
     
  0.703
Noca_3813
Sigma-70 region 2 domain-containing protein (257 aa)
 
     
  0.675
Noca_1925
Sigma-70 region 4 domain-containing protein (282 aa)
 
     
  0.651
Noca_4689
N-acetyltransferase GCN5 (224 aa)
   
          0.614
Noca_3126
Hypothetical protein (425 aa)
   
          0.571
Noca_1695
Stage II sporulation E family protein (346 aa)
   
          0.567
Noca_3295
Hypothetical protein (211 aa)
   
          0.518
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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